lnbase-biolab: Generic bio wetlab (vvhc)

lnbase-biolab is an extendable schema to track data generation in wet labs.

Data objects (File) get directly linked to

• Experiment: An experiment performed to generate data.

• Biosample: The biological samples from which data are generated.

• Readout: The measurements types applied to the biosamples.

The order of this tuple is inspired by the workflow:

• Plan an Experiment based on an ExperimentType:

  • ExperimentType: metadata that describes experiments to perform

• Prepare a Biosample containing all metadata including Tissue, Species, Donor, Treatment, Time, Mutation, etc.

  • Techsample A biosample extension for specific experiments that require pooling or splitting biosamples.

• Choose one or several Readout.

Install:

pip install lnbase-biolab

Get started:

• The LaminDB guide explains usage of this schema.

• Browse the API reference to learn about the tables within this schema.